The kinetic properties of the Rv1096 protein toward M. smegmatis PG were determined as described previously [19]. The molarity of M. smegmatis PG was calculated based the assumption that M. smegmatis PG is primarily composed of repeat units of GlcNAc-MurNAc (MurNGlyc)-L-Ala-D-Glu-A2pm, MW 868.8 [20–22]. First, the initial velocity was evaluated according to the duration of each reaction (5, 10, LY294002 datasheet 15, 30 or 45 min) and the Rv1096 concentration (1.22, 2.88 or 3.65 μg/ml) curves. Then, the optimal

conditions for the enzymatic reactions were determined. Based on the initial velocity and the optimal conditions that we identified, the steady-state kinetic parameters were determined by a Lineweaver-Burke plot. Lysozyme susceptibility assays To investigate whether the Rv10196 protein contributed to lysozyme resistance in M. smegmatis, wild-type M. smegmatis or M. smegmatis/Rv1096 with over-expressed Rv1096 protein were treated with lysozyme. Both bacterial strains were incubated in LBT medium at 37°C. When the OD600 reached ~0.2, the cultures were divided into two equal volumes parts. One part was treated with lysozyme (Sigma-Aldrich) at a final concentration of 200 μg/ml; the other was not given this treatment. Bacterial growth was monitored by measuring Selleckchem KPT330 the optical density at 600 nm. Bacterial viability was evaluated by counting

the number of colony forming units (CFU) per milliliter on LB agar [23]. LXH254 solubility dmso morphology of the M. smegmatisstrains after lysozyme treatment Light microscopy and electron microscopy were used to investigate whether the Rv1096 protein affected the morphology of M. smegmatis in the presence of lysozyme. Bacteria that were treated with lysozyme for 9 h were harvested by centrifugation at 4,500 × g at 4°C for 10 min, after which the pellets were washed with sterilized 1 M PBS (pH 7.0), three times. Samples were prepared for Ziehl-Neelsen acid-fast staining as described previously [24], and observed under a light microscope (Olympus CHB, Japan). The cells for electron microscopic analysis

were fixed with 2.5% glutaraldehyde, followed by post-fixation at room temperature for 2 h with 1% osmium tetroxide. The samples were dehydrated with ethanol, which was replaced with liquid carbon dioxide by critical point drying. The dried samples buy Lonafarnib were applied to a silicon wafer slide and sputter-coated with gold before examination by an electronic microscope (JSM-6360 scanning electron, JEOL, Japan). Statistical analysis Data are summarized as mean value ± standard deviation (SD). Data were assessed by two-tailed unpaired t tests. A p value of <0.05 was considered statistically significant. Results Rv1096 shares homology with other deacetylases The amino acid sequences of the Rv1096 protein and other known polysaccharide deacetylases [5, 8–12] were compared by Multalin analysis. The S. pneumoniae PgdA protein (spPdgA), L. monocytogenes PgdA (lmo0415) and L.